| Filename | Total | Flagged As Poor Quality | Sequence Length | %GC |
|---|---|---|---|---|
| 313A_C85FPANXX_CGTACG_L004_R1.fastq | 30,180,462 | 0 | 35-100 | 47 |
| 313A_C85FPANXX_CGTACG_L004_R2.fastq | 30,180,462 | 0 | 35-100 | 47 |
| 313B_C85FPANXX_GAGTGG_L004_R1.fastq | 30,289,816 | 0 | 35-100 | 47 |
| 313B_C85FPANXX_GAGTGG_L004_R2.fastq | 30,289,816 | 0 | 35-100 | 47 |
| 313C_C85FPANXX_ACTGAT_L004_R1.fastq | 29,578,786 | 0 | 35-100 | 47 |
| 313C_C85FPANXX_ACTGAT_L004_R2.fastq | 29,578,786 | 0 | 35-100 | 47 |
| 352A_C85FPANXX_ATTCCT_L004_R1.fastq | 29,015,015 | 0 | 35-100 | 47 |
| 352A_C85FPANXX_ATTCCT_L004_R2.fastq | 29,015,015 | 0 | 35-100 | 47 |
| 352B_C85FPANXX_ATCACG_L004_R1.fastq | 28,249,736 | 0 | 35-100 | 46 |
| 352B_C85FPANXX_ATCACG_L004_R2.fastq | 28,249,736 | 0 | 35-100 | 46 |
| 352C_C85FPANXX_CGATGT_L004_R1.fastq | 28,528,176 | 0 | 35-100 | 46 |
| 352C_C85FPANXX_CGATGT_L004_R2.fastq | 28,528,176 | 0 | 35-100 | 47 |
| 58722A_R1.fastq | 22,776,350 | 0 | 35-100 | 46 |
| 58722A_R2.fastq | 22,776,350 | 0 | 35-100 | 46 |
| 58722B_R1.fastq | 25,487,151 | 0 | 35-100 | 46 |
| 58722B_R2.fastq | 25,487,151 | 0 | 35-100 | 46 |
| 58722C_R1.fastq | 26,773,933 | 0 | 35-100 | 46 |
| 58722C_R2.fastq | 26,773,933 | 0 | 35-100 | 46 |
Library Sizes ranged between 22,776,350 and 30,289,816 reads.
Read totals for each library. Duplicated reads are conventionally an high overestimate at this point.
Summary of FastQC flags for each parameter
Heatmap showing mean base qualities for each library
Heatmap showing mean sequence qualities for each library
Heatmap of summed base distributions along each read
GC Content Heatmap normalised to theoretical GC content in the Hsapiens Transcriptome
GC Content Distributions for all reads showing theoretical GC content from the Hsapiens Transcriptome
| Filename | Sequence | Count | Percentage | Possible_Source |
|---|---|---|---|---|
| 313A_C85FPANXX_CGTACG_L004_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 49,322 | 0.1634 | No Hit |
| 313B_C85FPANXX_GAGTGG_L004_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 59,832 | 0.1975 | No Hit |
| 313C_C85FPANXX_ACTGAT_L004_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 43,797 | 0.1481 | No Hit |
| 352A_C85FPANXX_ATTCCT_L004_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 68,067 | 0.2346 | No Hit |
| 352B_C85FPANXX_ATCACG_L004_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 53,390 | 0.189 | No Hit |
| 352C_C85FPANXX_CGATGT_L004_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 46,101 | 0.1616 | No Hit |
| 58722A_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 36,962 | 0.1623 | No Hit |
| 58722B_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 42,496 | 0.1667 | No Hit |
| 58722C_R2 | AAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCT | 42,557 | 0.1589 | No Hit |
| 313B_C85FPANXX_GAGTGG_L004_R2 | AAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTC | 33,655 | 0.1111 | No Hit |
| 352A_C85FPANXX_ATTCCT_L004_R2 | AAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTC | 38,048 | 0.1311 | No Hit |
| 352B_C85FPANXX_ATCACG_L004_R2 | AAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTC | 30,033 | 0.1063 | No Hit |
| 58722A_R2 | AATGGACCCTACTGCAGAAATATCAAAAAGAAGTGTCTACGTTTTGTGTG | 25,048 | 0.11 | No Hit |
| 58722B_R2 | AATGGACCCTACTGCAGAAATATCAAAAAGAAGTGTCTACGTTTTGTGTG | 27,086 | 0.1063 | No Hit |
| 58722C_R2 | AATGGACCCTACTGCAGAAATATCAAAAAGAAGTGTCTACGTTTTGTGTG | 27,955 | 0.1044 | No Hit |
| 313A_C85FPANXX_CGTACG_L004_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 69,007 | 0.2286 | No Hit |
| 313B_C85FPANXX_GAGTGG_L004_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 80,672 | 0.2663 | No Hit |
| 313C_C85FPANXX_ACTGAT_L004_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 60,751 | 0.2054 | No Hit |
| 352A_C85FPANXX_ATTCCT_L004_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 88,964 | 0.3066 | No Hit |
| 352B_C85FPANXX_ATCACG_L004_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 82,565 | 0.2923 | No Hit |
| 352C_C85FPANXX_CGATGT_L004_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 70,536 | 0.2473 | No Hit |
| 58722A_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 44,680 | 0.1962 | No Hit |
| 58722B_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 50,854 | 0.1995 | No Hit |
| 58722C_R2 | AATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCCCTCT | 53,969 | 0.2016 | No Hit |
| 313A_C85FPANXX_CGTACG_L004_R2 | ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC | 43,166 | 0.143 | No Hit |
| 313B_C85FPANXX_GAGTGG_L004_R2 | ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC | 54,635 | 0.1804 | No Hit |
| 313C_C85FPANXX_ACTGAT_L004_R2 | ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC | 43,332 | 0.1465 | No Hit |
| 352A_C85FPANXX_ATTCCT_L004_R2 | ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC | 64,079 | 0.2208 | No Hit |
| 352B_C85FPANXX_ATCACG_L004_R2 | ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC | 60,059 | 0.2126 | No Hit |
| 352C_C85FPANXX_CGATGT_L004_R2 | ACAAAATGTATCCTGCTCACCTTCTGGTCCTGTTGGCAGTTTGTGTCTCC | 49,537 | 0.1736 | No Hit |
Universal Adapter Content
| Filename | Sequence | Count | PValue | Obs/Exp_Max | Max_Obs/Exp_Position |
|---|---|---|---|---|---|
| 352A_C85FPANXX_ATTCCT_L004_R2 | ACTGACA | 126,780 | 0 | 27.16 | 8 |
| 313B_C85FPANXX_GAGTGG_L004_R2 | ACTGACA | 123,300 | 0 | 27.15 | 8 |
| 352B_C85FPANXX_ATCACG_L004_R2 | ACTGACA | 122,690 | 0 | 30.74 | 8 |
| 352A_C85FPANXX_ATTCCT_L004_R2 | CACTGAC | 121,480 | 0 | 28.34 | 7 |
| 352B_C85FPANXX_ATCACG_L004_R2 | CACTGAC | 118,175 | 0 | 31.9 | 7 |
| 313B_C85FPANXX_GAGTGG_L004_R2 | CACTGAC | 115,320 | 0 | 29.01 | 7 |
| 352B_C85FPANXX_ATCACG_L004_R2 | CCACTGA | 113,140 | 0 | 33.62 | 6 |
| 313A_C85FPANXX_CGTACG_L004_R1 | CCAGAGA | 123,870 | 0 | 25.33 | 8 |
| 313B_C85FPANXX_GAGTGG_L004_R1 | CCAGAGA | 115,045 | 0 | 25.98 | 8 |
| 352A_C85FPANXX_ATTCCT_L004_R2 | CTGACAA | 136,420 | 0 | 25.33 | 9 |
| 313B_C85FPANXX_GAGTGG_L004_R2 | CTGACAA | 133,115 | 0 | 25.22 | 9 |
| 352B_C85FPANXX_ATCACG_L004_R2 | CTGACAA | 131,465 | 0 | 28.74 | 9 |
| 58722C_R2 | CTGACAA | 120,040 | 0 | 25.93 | 9 |
| 58722B_R2 | CTGACAA | 115,845 | 0 | 25.4 | 9 |
| 352A_C85FPANXX_ATTCCT_L004_R2 | GACAAAA | 158,635 | 0 | 16.04 | 5 |
| 313B_C85FPANXX_GAGTGG_L004_R2 | GACAAAA | 154,105 | 0 | 16.03 | 5 |
| 58722C_R2 | GACAAAA | 133,735 | 0 | 16.53 | 5 |
| 58722B_R2 | GACAAAA | 130,530 | 0 | 16.03 | 5 |
| 313A_C85FPANXX_CGTACG_L004_R2 | GACAAAA | 128,730 | 0 | 15.62 | 5 |
| 313A_C85FPANXX_CGTACG_L004_R1 | TCCAGAG | 125,315 | 0 | 25.14 | 7 |
| 313B_C85FPANXX_GAGTGG_L004_R1 | TCCAGAG | 120,140 | 0 | 24.95 | 7 |
| 352A_C85FPANXX_ATTCCT_L004_R2 | TGACAAA | 147,470 | 0 | 17.2 | 4 |
| 313B_C85FPANXX_GAGTGG_L004_R2 | TGACAAA | 145,555 | 0 | 17.01 | 4 |
| 58722C_R2 | TGACAAA | 126,250 | 0 | 17.43 | 4 |
| 313A_C85FPANXX_CGTACG_L004_R2 | TGACAAA | 124,125 | 0 | 16.22 | 4 |
| 352C_C85FPANXX_CGATGT_L004_R2 | TGACAAA | 122,940 | 0 | 17.18 | 4 |
| 58722B_R2 | TGACAAA | 122,135 | 0 | 17.08 | 4 |
| 58722C_R2 | TGCGCGT | 131,290 | 0 | 25.1 | 94 |
| 352B_C85FPANXX_ATCACG_L004_R2 | TGCGCGT | 117,810 | 0 | 31.78 | 94 |
| 58722B_R2 | TGCGCGT | 114,565 | 0 | 25.28 | 94 |